rs76085262 chr1:1366828 A>G

Sequence
gagtgttaattggtgactgtgtta[A/G]agcgtgggtgtgaattggtgtctg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZNF24_HUMAN NFIC_HUMAN KDM1A_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZNF24_HUMAN 1.79 -1.02 3.4·10-41.00 1.20 n/a n/a
NFIC_HUMAN 3.14 -3.48 6.3·10-41.00 1.00 n/a No Hit
KDM1A_HUMAN 2.65 -2.34 5.3·10-31.00 1.00 n/a n/a
HDAC1_HUMAN 2.15 n/a 0.021.00 2.00 n/a n/a
HDAC2_HUMAN 2.51 -2.35 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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