rs7608996 chr2:9655628 T>C

Sequence
agtggaagaagatgaagtgtgact[T/C]agctattcaaccacgccacaaccc
ASB in cell types
K562 (myelogenous leukemia) A549 (lung carcinoma) MCF10A (breast epithelial cells)
ASB for transcription factors
MAFG_HUMAN EMSY_HUMAN TEAD4_HUMAN
Search SNPs nearby
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View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MAFG_HUMAN n/a 3.31 1.002.5·10-6 2.00 n/a No Hit
EMSY_HUMAN n/a 3.29 1.004.7·10-6 2.00 n/a n/a
TEAD4_HUMAN -3.19 3.23 1.001.4·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP arthritis including non-rheumatoid,  longstanding arthritis,  spine bone mineral density (bmd),  transmission distortion,  years of education
GTEx eQTL Cells_Cultured_fibroblasts

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