rs7612 chr7:5527481 C>T
- Sequence
atggcaagggacttcctgtaacaa[C/T]gcatctcatatttggaatgactat
- ASB in cell types
- SET2 (Adult acute megakaryoblastic leukemia, Homo Sapiens) GM01310 ( Transformed lymphovlasoid cell line ) chondrocytes CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAT1_HUMAN AHR_HUMAN PBIP1_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.46 | -1.95 | 1.33 | -0.59 | Weak Concordant | |||
| AHR_HUMAN | 2.30 | -1.05 | 1.00 | n/a | No Hit | |||
| PBIP1_HUMAN | 1.93 | -1.04 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.43 | -1.03 | 1.00 | n/a | No Hit | |||
| HIRA_HUMAN | 1.45 | -0.29 | 1.00 | n/a | n/a |
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Motif analysis
