rs762729 chrX:152942018 G>C
- Sequence
gtcgtcagggctgcccagggggag[G/C]gggtgtggacgtgcagacagggaa
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) GM19193 (female B-cells Lymphoblastoid Cell Lines) glioblastoma patient-derived cell model
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.76 | 2.56 | 1.82 | -2.51 | Concordant |
Items per page:
1 – 1 of 1
Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood