rs7629208 chr3:193870105 C>G
- Sequence
gcctccaccgtgtcgcagcgctgg[C/G]cccctgaggggtgcctcctccttt
- ASB in cell types
- HKC8 (kidney proximal tubule cell line)
- ASB for transcription factors
- LDB1_HUMAN E2F8_HUMAN LYL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LDB1_HUMAN | -1.94 | 2.46 | 2.00 | n/a | n/a | |||
| E2F8_HUMAN | n/a | 2.30 | 1.00 | n/a | n/a | |||
| LYL1_HUMAN | -2.22 | 2.19 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd