rs7640424 chr3:108101216 C>T

Sequence
tttgtgacagccacctgggctaga[C/T]cacctggagctgtttctggcacac
ASB in cell types
TMD8 (diffuse large B-cell lymphoma) Jurkat (T-cells)
ASB for transcription factors
ITF2_HUMAN MYB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ITF2_HUMAN 2.05 -0.77 5.7·10-31.00 1.67 -1.94 Weak Concordant
MYB_HUMAN 1.80 -1.14 0.031.00 1.33 n/a No Hit
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Motif analysis

ITF2_HUMAN Weak Concordant
ITF2_HUMAN pic

Genetic associations

EMBL-EBI body mass index,  educational attainment (mtag),  educational attainment (years of education)
GRASP adiponectin levels,  body mass index (bmi),  coronary artery disease (cad),  fasting insulin,  hdl cholesterol,  homa-b,  homa-ir,  systolic blood pressure (sbp),  years of education
GTEx eQTL Stomach,  Whole_Blood

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