rs7643706 chr3:188319736 A>G

Sequence
ctttccctgatgttaacatcttat[A/G]taaccaaagtatgtttaagcaaag
ASB in cell types
LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells) LNCaP95
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -1.26 2.56 1.007.8·10-11 2.50 n/a No Hit
ANDR_HUMAN 1.85 2.29 0.931.6·10-4 1.83 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  hdl cholesterol,  microalbuminuria,  parkinsons disease,  total cholesterol

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