rs764729 chr2:160270221 A>C
- Sequence
cacaccctcttgccttccgcagcc[A/C]ccgagcgagtcacgggagacactc
- ASB in cell types
- glioblastoma cells MCF10A (breast epithelial cells) erythroid cells A549 (lung carcinoma)
- ASB for transcription factors
- TEAD4_HUMAN CTCF_HUMAN TIF1B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD4_HUMAN | 2.55 | -2.36 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.78 | 0.47 | 1.29 | n/a | No Hit | |||
| TIF1B_HUMAN | -4.94 | 2.87 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Ovary, Pancreas, Testis, Uterus, Whole_Blood