rs7703730 chr5:179559631 C>A

Sequence
aatgtttgggggcgggacgctttc[C/A]cagcacgccctctaagagcttggg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN IRF3_HUMAN NFAC3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -2.67 2.91 1.007.3·10-4 1.00 -4.67 Discordant
IRF3_HUMAN -2.57 2.79 1.000.03 1.00 n/a No Hit
NFAC3_HUMAN -2.56 2.48 1.000.03 1.00 n/a No Hit
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Motif analysis

IKZF1_HUMAN Discordant
IKZF1_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  fasting insulin,  homa-ir,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Pancreas,  Spleen,  Testis,  Thyroid,  Whole_Blood

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