rs7703730 chr5:179559631 C>A
- Sequence
aatgtttgggggcgggacgctttc[C/A]cagcacgccctctaagagcttggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IRF3_HUMAN NFAC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -2.67 | 2.91 | 1.00 | -4.67 | Discordant | |||
| IRF3_HUMAN | -2.57 | 2.79 | 1.00 | n/a | No Hit | |||
| NFAC3_HUMAN | -2.56 | 2.48 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Spleen, Testis, Thyroid, Whole_Blood