rs7707141 chr5:133287699 T>C
- Sequence
cctgacactgtggtccccactgcc[T/C]cctgctgcccgcactctgctctag
- ASB in cell types
- glioblastoma patient-derived cell model 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HMEC (human mammary epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAG2_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.91 | 2.78 | 2.59 | 4.36 | Concordant | |||
| STAG2_HUMAN | -2.84 | 2.74 | 1.00 | n/a | n/a | |||
| REST_HUMAN | n/a | 2.16 | 2.00 | n/a | No Hit |
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Motif analysis
