rs7730740 chr5:142013141 T>C
- Sequence
gctacccggaccgactctcccagg[T/C]ggaggagttccggccactcagtcc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- NELFE_HUMAN MNT_HUMAN RFOX2_HUMAN FOSL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NELFE_HUMAN | n/a | 1.67 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.51 | 1.76 | 1.75 | n/a | n/a | |||
| RFOX2_HUMAN | 0.18 | 1.77 | 1.62 | n/a | n/a | |||
| FOSL1_HUMAN | -1.61 | 2.66 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Spleen, Whole_Blood