rs7760821 chr6:113757201 G>A
- Sequence
tctcttgctgccaccatgtgaaac[G/A]tgcctttcactttccaccatgatt
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.77 | 3.12 | 1.67 | -0.14 | Weak Discordant | |||
| STAG1_HUMAN | -1.31 | 2.85 | 1.80 | n/a | n/a |
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Motif analysis
