rs7766641 chr6:26183874 G>A

Sequence
gtgaccaaggcgcagaagaaggac[G/A]gcaagaagcgcaagcgcagccgca
ASB in cell types
MCF10A (breast epithelial cells)
ASB for transcription factors
HCFC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HCFC1_HUMAN 2.06 n/a 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI cigarettes smoked per day (mtag),  height,  smoking behaviour (cigarettes smoked per day)
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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