rs77804600 chr1:2391602 T>C

Sequence
attggtctttgtcgcaaggggggg[T/C]gtggccacgggcctagtccctgag
ASB in cell types
HepG2 (hepatoblastoma) CD34+ hematopoietic stem cells-derived proerythroblasts CD14+ monocytes HeLa (cervical adenocarcinoma)
ASB for transcription factors
RBM25_HUMAN GATA1_HUMAN STAT1_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN 1.69 -2.81 7.3·10-61.00 1.50 n/a n/a
GATA1_HUMAN 2.54 0.25 3.8·10-41.00 1.83 n/a No Hit
STAT1_HUMAN 2.57 n/a 8.8·10-41.00 3.00 n/a No Hit
TYY1_HUMAN 1.10 0.74 1.4·10-31.00 1.38 n/a No Hit
TCF21_HUMAN 1.64 n/a 1.9·10-31.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI mean corpuscular hemoglobin
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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