rs78014387 chr1:119611791 A>C
- Sequence
ccgctgcacctcacgtggtgcacc[A/C]cacgggggcagcaaaggctaagag
- ASB in cell types
- GM18505 (female B-cells Lymphoblastoid Cell Lines) HeLa (cervical adenocarcinoma) kidney HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.47 | -0.02 | 1.81 | -4.31 | Concordant | |||
| STAG1_HUMAN | 1.72 | n/a | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.94 | -0.37 | 1.40 | n/a | n/a | |||
| SMC3_HUMAN | 1.56 | -0.07 | 1.50 | n/a | n/a |
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Motif analysis
