rs78037977 chr1:172746562 A>G

Sequence
gttgactttcctctgaggagtaag[A/G]gtgacccttgcttaaaaggacaac
ASB in cell types
breast tumor 22RV1 (prostate carcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAT1_HUMAN TCF21_HUMAN RELB_HUMAN DAXX_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.38 -0.11 3.0·10-41.00 1.50 n/a No Hit
TCF21_HUMAN 2.59 -4.47 4.1·10-41.00 1.50 n/a n/a
RELB_HUMAN -2.71 2.93 1.002.7·10-3 1.00 n/a No Hit
DAXX_HUMAN -4.42 1.96 1.004.1·10-3 2.00 n/a n/a
ETS1_HUMAN -1.47 1.73 1.000.02 1.00 n/a No Hit
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Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

EMBL-EBI allergic sensitization,  asthma (childhood onset),  asthma onset (childhood vs adult),  itch intensity from mosquito bite,  mosquito bite size,  vitiligo
GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Lung,  Skin_Sun_Exposed_Lower_leg

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