rs78050613 chr8:10799941 G>A
- Sequence
gggctatttgtcattccactagct[G/A]actgctaaggctcagaaaggttaa
- ASB in cell types
- K562 (myelogenous leukemia) HKC8 (kidney proximal tubule cell line) HCASMC (Human coronary artery smooth muscle cells) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- PKNX1_HUMAN ATF4_HUMAN NR2C1_HUMAN PBX2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 3.28 | n/a | 2.00 | n/a | No Hit | |||
| ATF4_HUMAN | 3.30 | n/a | 2.00 | n/a | No Hit | |||
| NR2C1_HUMAN | 1.52 | n/a | 2.00 | n/a | No Hit | |||
| PBX2_HUMAN | 3.44 | n/a | 2.00 | n/a | No Hit | |||
| TIF1A_HUMAN | 2.02 | -0.86 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood