rs78154367 chr16:25258175 C>T

Sequence
tgccggggaaggagagcacgggag[C/T]ggggactcctgtgtctggcggagg
ASB in cell types
HEK293 (embryonic kidney) K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
GABP1_HUMAN ZN133_HUMAN TBX21_HUMAN CDK9_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN 1.27 n/a 6.2·10-31.00 2.00 n/a n/a
ZN133_HUMAN 3.07 n/a 0.011.00 2.00 n/a n/a
TBX21_HUMAN 1.46 -0.03 0.021.00 1.00 n/a No Hit
CDK9_HUMAN 1.16 0.16 0.041.00 1.00 n/a n/a
CTCF_HUMAN 0.30 1.44 1.000.04 1.27 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Stomach,  Thyroid

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