rs7821911 chr8:38734617 A>G

Sequence
cagggagggcttggtatgtttatt[A/G]tgcaacaaaggactctcctggccc
ASB in cell types
GM19238 (female B-cells lymphoblastoid cell lines) MCF10A (breast epithelial cells)
ASB for transcription factors
CEBPB_HUMAN P63_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN -0.73 2.19 1.001.2·10-3 1.67 1.72 Weak Concordant
P63_HUMAN -0.03 2.75 1.002.7·10-3 1.75 n/a No Hit
CTCF_HUMAN 2.14 0.81 0.031.00 1.30 n/a No Hit
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Motif analysis

CEBPB_HUMAN Weak Concordant
CEBPB_HUMAN pic

Genetic associations

GRASP body mass index (bmi),  premature ovarian failure,  schizophrenia,  spine bone mineral density (bmd)
GTEx eQTL Adipose_Visceral_Omentum,  Cells_Cultured_fibroblasts,  Liver,  Thyroid

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