rs78517159 chr17:64919496 A>T
- Sequence
ggagcgcggtcacgtgagctgagc[A/T]gcctacgagcctgggacggggcga
- ASB in cell types
- HepG2 (hepatoblastoma) HeLa (cervical adenocarcinoma) HT1080 (fibrosarcoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN INT13_HUMAN SMCA4_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.05 | -1.17 | 2.00 | n/a | No Hit | |||
| INT13_HUMAN | 2.46 | -2.37 | 1.60 | n/a | n/a | |||
| SMCA4_HUMAN | 1.77 | 0.42 | 1.76 | n/a | n/a | |||
| BRD2_HUMAN | 2.69 | -0.31 | 1.12 | n/a | n/a | |||
| BRD4_HUMAN | 1.93 | -0.51 | 1.55 | n/a | n/a |
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