rs78972328 chr8:143547869 C>A
- Sequence
ccatcctggctaacacggtgaaac[C/A]ctgtctctactaaaaacacaaaaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- LMBL2_HUMAN RING2_HUMAN KDM1A_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | 3.51 | n/a | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.69 | n/a | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 2.55 | -4.97 | 2.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.38 | n/a | 2.00 | n/a | n/a | |||
| MGAP_HUMAN | 2.35 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood