rs7898089 chr10:45261428 T>C

Sequence
ctatgataaaaacatataactgtc[T/C]ctagatgaagttgcaagtccttgt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MAFG_HUMAN KDM1A_HUMAN MEIS2_HUMAN ZN316_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MAFG_HUMAN n/a 4.31 1.002.1·10-7 2.00 n/a No Hit
KDM1A_HUMAN -3.01 3.06 1.007.0·10-6 1.25 n/a n/a
MEIS2_HUMAN -1.88 2.28 1.000.02 1.00 n/a No Hit
ZN316_HUMAN -0.04 2.30 0.770.03 3.00 n/a n/a
TAL1_HUMAN n/a 2.55 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  ldl cholesterol,  major depressive disorder,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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