rs790104 chr3:122651955 T>C
- Sequence
gggaactgactgttagacggaaaa[T/C]taacaaatagaaaggaatagcatc
- ASB in cell types
- LNCaP (prostate carcinoma) pancreas
- ASB for transcription factors
- ANDR_HUMAN TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.62 | -0.37 | 2.50 | n/a | No Hit | |||
| TBP_HUMAN | 1.34 | 0.63 | 1.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Whole_Blood