rs7903174 chr10:122030013 C>T
- Sequence
tgtcacaactcagagatggggtgc[C/T]actggcatctggtaggtagaggtc
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte RWPE2
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.46 | 1.97 | 1.75 | 0.13 | Weak Concordant | |||
| RAD21_HUMAN | -0.70 | 2.53 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | -1.32 | 1.74 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Lung, Nerve_Tibial, Pituitary, Thyroid