rs7904446 chr10:50624725 T>C
- Sequence
gtcgcctgaaggaaggttttcctc[T/C]gctccccgagcgaagccccagcgc
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) neural cell HepG2 (hepatoblastoma)
- ASB for transcription factors
- MITF_HUMAN ANDR_HUMAN INT13_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MITF_HUMAN | 1.88 | -1.69 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.00 | -0.06 | 2.00 | n/a | No Hit | |||
| INT13_HUMAN | -1.45 | 1.73 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 1.20 | -0.60 | 1.12 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood