rs79187141 chr12:130762076 C>A
- Sequence
tcctgcaaggcaagttccgcaccg[C/A]gaccacaggcggccacagccccgc
- ASB in cell types
- MS-1 (Small cell lung carcinoma) SEM (childhood B acute lymphoblastic leukemia) foreskin keratinocyte GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | 1.23 | 1.50 | -3.33 | Discordant | |||
| ERG_HUMAN | -4.33 | 3.00 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood