rs7920721 chr10:11678309 A>G

Sequence
gcagtcaccctcagctgttcacat[A/G]ttgtctgtggctgctttcaggctg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte
ASB for transcription factors
FOXK2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXK2_HUMAN 2.92 -4.99 1.8·10-31.00 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI alzheimers disease,  alzheimers disease (late onset),  alzheimers disease in apoe e4- carriers,  alzheimers disease or family history of alzheimers disease
GRASP alzheimers disease (apoe3 homozygotes),  late onset alzheimers disease
GTEx eQTL Spleen,  Whole_Blood

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