rs7927012 chr11:5597187 T>C

Sequence
cactggctgtgtgcccgaagactg[T/C]taacttgacttctttgagctttag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
KDM1A_HUMAN MTG8R_HUMAN MEIS2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KDM1A_HUMAN 1.89 n/a 9.2·10-41.00 2.00 n/a n/a
MTG8R_HUMAN 2.90 n/a 0.021.00 2.00 n/a n/a
MEIS2_HUMAN 2.58 -1.59 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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