rs7941706 chr11:62787614 C>T
- Sequence
actttcgctttccgaccgggcttg[C/T]tgctgctcggagccggtggacctg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma) primary B-CLL cells
- ASB for transcription factors
- SCRT2_HUMAN FOXK2_HUMAN STAT1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SCRT2_HUMAN | -2.38 | 2.78 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 0.35 | 2.62 | 1.70 | n/a | n/a | |||
| STAT1_HUMAN | 1.40 | -1.11 | 3.00 | n/a | No Hit | |||
| BRD4_HUMAN | -0.52 | 3.32 | 2.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood