rs7947657 chr11:49995859 T>C
- Sequence
caattttcctccctttttgtgccc[T/C]tctactagggaccaagctttatgc
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) K562 (myelogenous leukemia) LNCaP C4-2B (prostate carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.32 | 0.34 | 1.24 | n/a | No Hit | |||
| NFIC_HUMAN | 0.44 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Liver, Skin_Sun_Exposed_Lower_leg, Testis