rs7973612 chr12:52164088 T>C
- Sequence
tcaggctccgaagaagcactgtct[T/C]gtcacggccagcagagggcagagg
- ASB in cell types
- WA01 (H1, human embryonic stem cells) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN CBX3_HUMAN CLOCK_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | 0.72 | 1.29 | n/a | No Hit | |||
| RAD21_HUMAN | 1.80 | 0.85 | 1.18 | n/a | n/a | |||
| CBX3_HUMAN | 2.71 | -2.78 | 1.00 | n/a | n/a | |||
| CLOCK_HUMAN | 2.73 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4