rs79837858 chr4:118278756 G>C
- Sequence
agagagcgtgtgccgaaggcctcg[G/C]cctttcacattcgggaagcgtcgg
- ASB in cell types
- primary B-CLL cells CD14+ monocytes 22RV1 (prostate carcinoma) MDM(monocyte derived macrophages)
- ASB for transcription factors
- STAT1_HUMAN BRD4_HUMAN ANDR_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.13 | n/a | 3.00 | n/a | No Hit | |||
| BRD4_HUMAN | 2.33 | -0.45 | 1.86 | n/a | n/a | |||
| ANDR_HUMAN | 2.98 | -5.32 | 2.00 | n/a | No Hit | |||
| SPI1_HUMAN | 2.08 | -1.06 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood