rs79984239 chr7:726583 A>G
- Sequence
gggacagcgggcgagcacgacaag[A/G]gcacaggcccacgtgcgcaccggc
- ASB in cell types
- HEK293 (embryonic kidney) T47D (invasive ductal carcinoma) adult erythroblasts Jurkat (T-cells)
- ASB for transcription factors
- GABPA_HUMAN HIF1A_HUMAN HCFC1_HUMAN ZN341_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 2.70 | -1.49 | 1.83 | n/a | No Hit | |||
| HIF1A_HUMAN | 3.02 | -0.79 | 1.83 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.19 | -3.65 | 1.50 | n/a | n/a | |||
| ZN341_HUMAN | 1.41 | -2.60 | 1.33 | -2.05 | Concordant | |||
| ZN580_HUMAN | 2.95 | -2.83 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Vagina, Whole_Blood