rs8006991 chr14:69603767 T>C

Sequence
attcttaatcccaccactagaggc[T/C]gggcattcacaagggactgaggac
ASB in cell types
THP-1 (acute monocytic leukemia) HEK293 (embryonic kidney) GSC23 (Glioblastoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.39 2.74 1.002.0·10-104 1.78 3.14 Concordant
STAG1_HUMAN n/a 1.69 1.002.1·10-18 2.90 n/a n/a
RAD21_HUMAN -0.97 2.02 1.001.6·10-14 1.74 n/a n/a
STAT1_HUMAN n/a 3.71 1.004.8·10-4 3.00 n/a No Hit
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP adiponectin levels,  hypertension (early onset hypertension),  irritible bowel syndrome,  tetrology of fallot
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Lung,  Nerve_Tibial,  Testis,  Whole_Blood

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