rs8026157 chr15:98953158 A>G
- Sequence
ggttctgagatctgaacaggcacc[A/G]tctggtgacactaggggctgaagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- RB_HUMAN CTCF_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RB_HUMAN | 3.02 | -3.16 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.70 | 3.06 | 1.05 | -2.37 | Concordant | |||
| SPT5H_HUMAN | -1.05 | 1.56 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood