rs8070007 chr17:58631808 A>G
- Sequence
gatatactcctcgagaaacacact[A/G]tagaaattatccctcaaaatatag
- ASB in cell types
- GM02630 (Fanconi anemi) GM19099 (female B-cells Lymphoblastoid Cell Lines) SYO-1(Biphasic synovial sarcoma) spleen
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.78 | -0.14 | 1.57 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, birth weight, diastolic blood pressure (dbp), ldl cholesterol, systolic blood pressure (sbp)
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood