rs8070030 chr17:35537811 T>A

Sequence
ttttaaagtttccatttctcagaa[T/A]tctcctactcattttaggcctgcc
ASB in cell types
K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) 1.25 0.10 1.4·10-61.00 2.05
GM12878 (female B-cells lymphoblastoid cell line) 0.42 0.93 0.992.1·10-6 1.08
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  college completion,  total cholesterol,  waist hip ratio,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_EBV-transformed_lymphocytes,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Testis,  Thyroid

Download