rs8070447 chr17:45151932 A>C

Sequence
aaaatgcaccttgtattgcataag[A/C]agcatacacaaatcaataaatcaa
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ATF3_HUMAN ATF4_HUMAN ZEB2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN n/a 1.31 1.002.4·10-6 2.00 n/a No Hit
ATF4_HUMAN n/a 1.79 1.002.5·10-6 2.00 0.73 Weak Concordant
ZEB2_HUMAN -0.14 2.51 1.000.04 2.00 n/a n/a
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Motif analysis

ATF4_HUMAN Weak Concordant
ATF4_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  arthritis including non-rheumatoid,  asthma,  eye color,  ldl cholesterol,  schizophrenia,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Stomach,  Thyroid,  Whole_Blood

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