rs8072613 chr17:62751279 C>T

Sequence
ccttgaatcgacggcttacctgcc[C/T]ggaacctgtttcctcacctgcaaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN ERR1_HUMAN FOXA1_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.84 -0.09 2.4·10-131.00 2.97 n/a No Hit
ERR1_HUMAN 1.66 n/a 2.0·10-51.00 2.00 n/a No Hit
FOXA1_HUMAN 1.71 -0.62 3.9·10-31.00 2.00 n/a No Hit
CREB1_HUMAN 1.55 -4.45 0.011.00 2.50 n/a No Hit
ZN217_HUMAN 2.37 n/a 0.031.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  microalbuminuria,  systolic blood pressure (sbp),  urinary albumin-to-creatinine ratio,  waist hip ratio
GTEx eQTL Artery_Tibial,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Prostate,  Testis

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