rs8077042 chr17:47324913 C>G
- Sequence
cgttctctcttgtactcactctga[C/G]gacattgtctccttaccaccccac
- ASB in cell types
- monocytes from periferal blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRBP2_HUMAN SMCA5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | n/a | 2.52 | 2.50 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.56 | -2.18 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Lung, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach