rs8089314 chr18:50287879 T>C

Sequence
ttcgccgggaacatggccgcgctc[T/C]aatgtggctttcccgagggcgccg
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma) breast tumor CD14+ monocytes
ASB for transcription factors
TYY1_HUMAN ESR1_HUMAN ZBT11_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN 0.91 0.42 1.001.5·10-6 1.00 n/a No Hit
ESR1_HUMAN n/a 3.93 1.003.1·10-6 2.00 n/a No Hit
ZBT11_HUMAN n/a 2.21 1.001.0·10-3 2.00 n/a n/a
CTCF_HUMAN -0.01 1.00 1.002.1·10-3 1.60 n/a No Hit
STAT1_HUMAN 0.14 1.88 0.714.5·10-3 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Tibial,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Nerve_Tibial,  Thyroid

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