rs8095893 chr18:63936245 A>G
- Sequence
tgcctcttcctttcgggccccggg[A/G]cctgaccttccttccgggtccgca
- ASB in cell types
- glioblastoma patient-derived cell model SEM (childhood B acute lymphoblastic leukemia) MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ERG_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | n/a | 2.65 | 1.50 | n/a | No Hit | |||
| GABP1_HUMAN | -0.55 | 1.82 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellum, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood