rs8106337 chr19:39502951 C>G
- Sequence
ccgcgcgcgctgcgagccgcctgc[C/G]gtcgggaccgcgtgcacgcgcctc
- ASB in cell types
- HepG2 (hepatoblastoma) Kelly (neuroblastoma) K562 (myelogenous leukemia) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- ERR1_HUMAN MAD3_HUMAN CDN1B_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERR1_HUMAN | n/a | 3.12 | 2.00 | n/a | No Hit | |||
| MAD3_HUMAN | 3.05 | -2.79 | 1.00 | n/a | n/a | |||
| CDN1B_HUMAN | -0.56 | 1.62 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.19 | 0.77 | 1.82 | 3.69 | Concordant | |||
| JUN_HUMAN | -0.12 | 1.33 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid