ADASTRA v5.1.3
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rs8110629
chr19:19063428
C
>
T
Sequence
gccttgatggtccaagttcacatc[C/T]gcttctgtgctaggtggccagagg
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
K562 (myelogenous leukemia)
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ESR1_HUMAN
ETV2_HUMAN
MNT_HUMAN
ZN687_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN
0.27
1.09
1.00
3.4·10
-13
2.00
n/a
No Hit
ETV2_HUMAN
-4.57
2.60
1.00
0.01
1.50
n/a
No Hit
MNT_HUMAN
1.49
0.91
0.02
1.00
1.83
n/a
n/a
ZN687_HUMAN
2.14
-1.81
0.05
1.00
1.00
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol change with statins
,
ldl cholesterol
GTEx eQTL
Artery_Tibial
,
Brain_Nucleus_accumbens_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Heart_Atrial_Appendage
,
Heart_Left_Ventricle
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Stomach
,
Thyroid
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)