ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs812
chr8:98045298
G
>
A
Sequence
ctcacatctgcccgccctggccaa[G/A]acatctctccacgtgaatcgtctt
ASB in cell types
K562 (myelogenous leukemia)
MCF7 (Invasive ductal breast carcinoma)
MDA-MB-231 (breast adenocarcinoma)
A549 (lung carcinoma)
ASB for transcription factors
CLOCK_HUMAN
BRD2_HUMAN
SMAD3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CLOCK_HUMAN
-3.55
3.59
1.00
2.8·10
-5
1.00
n/a
No Hit
BRD2_HUMAN
0.31
1.48
0.62
0.01
2.92
n/a
n/a
SMAD3_HUMAN
1.81
0.28
0.04
1.00
1.00
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
mitral annular calcium
GTEx eQTL
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Muscle_Skeletal
,
Skin_Not_Sun_Exposed_Suprapubic
,
Thyroid
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)