rs812583 chr3:194685776 C>G
- Sequence
cctttaagaaaccaggaatccgcc[C/G]ggagtcggagcccaaaacagatcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) foreskin keratinocyte MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line)
- ASB for transcription factors
- TYY1_HUMAN CDN1B_HUMAN IKZF1_HUMAN CHD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.82 | n/a | 1.00 | n/a | No Hit | |||
| CDN1B_HUMAN | -0.64 | 1.52 | 4.00 | n/a | n/a | |||
| IKZF1_HUMAN | 0.01 | 1.74 | 1.62 | n/a | No Hit | |||
| CHD1_HUMAN | -2.90 | 1.90 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood