rs817311 chr20:63949375 A>G
- Sequence
cccgagaccgcatgcgggggctgc[A/G]gctggaatgggacctgcaccccac
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) GSC23 (Glioblastoma) esophagus squamous epithelium
- ASB for transcription factors
- COT1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 1.73 | -1.67 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.94 | 0.44 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Whole_Blood