rs820495 chr9:6704188 C>G
- Sequence
gaagatcctggtcccgtcagccag[C/G]tgacccacatgcgttgcggaggcg
- ASB in cell types
- CD14+ monocytes SK-N-SH (neuroblastoma) monocytes from periferal blood
- ASB for transcription factors
- USF1_HUMAN STAT1_HUMAN SRBP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 2.07 | 0.35 | 1.25 | 3.95 | Discordant | |||
| STAT1_HUMAN | 1.70 | -0.70 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | -3.51 | 2.76 | 2.00 | n/a | No Hit |
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Motif analysis
