rs834837 chr2:156342020 C>G

Sequence
cgccccaaacaaagtcccccgact[C/G]taggtccaggatacgttacctgcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MNT_HUMAN RBBP5_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MNT_HUMAN -1.02 2.18 1.002.9·10-4 1.00 n/a n/a
RBBP5_HUMAN n/a 2.62 1.000.02 3.00 n/a n/a
TYY1_HUMAN -1.48 2.43 1.000.03 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Uterus

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