rs838493 chr12:124681500 A>G
- Sequence
ccaagaagcctagaagagtgactc[A/G]accctttacagagaaagagtttgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12891 (male B- cells lymphoblastoid cell line) CD14+ monocytes HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN ESR1_HUMAN SKI_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.64 | 0.12 | 1.81 | n/a | No Hit | |||
| STAT1_HUMAN | 3.09 | -5.22 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.47 | 0.13 | 1.57 | n/a | No Hit | |||
| SKI_HUMAN | 3.81 | n/a | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 2.36 | 0.85 | 2.67 | n/a | n/a |
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Motif analysis
